IL_4WPO_249

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

4WPO|1|CA|G|1801, 4WPO|1|CA|G|1816, 4WPO|1|CA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WPO_249 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0504

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4WPO|1|CA|U|1798
4WPO|1|CA|G|1799
4WPO|1|CA|C|1800
4WPO|1|CA|G|1801
4WPO|1|CA|A|1802
4WPO|1|CA|A|1803
4WPO|1|CA|C|1804
*
4WPO|1|CA|G|1813
4WPO|1|CA|G|1814
4WPO|1|CA|A|1815
4WPO|1|CA|G|1816
4WPO|1|CA|G|1817
4WPO|1|CA|U|1818
4WPO|1|CA|A|1819
4WPO|1|CA|U|1820
4WPO|1|CA|A|1821

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L2

Chain DA

Small subunit ribosomal RNA; SSU rRNA