IL_4WQ1_134

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

4WQ1|1|14|G|1801, 4WQ1|1|14|G|1816, 4WQ1|1|14|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_134 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0545

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4WQ1|1|14|U|1798
4WQ1|1|14|G|1799
4WQ1|1|14|C|1800
4WQ1|1|14|G|1801
4WQ1|1|14|A|1802
4WQ1|1|14|A|1803
4WQ1|1|14|C|1804
*
4WQ1|1|14|G|1813
4WQ1|1|14|G|1814
4WQ1|1|14|A|1815
4WQ1|1|14|G|1816
4WQ1|1|14|G|1817
4WQ1|1|14|U|1818
4WQ1|1|14|A|1819
4WQ1|1|14|U|1820
4WQ1|1|14|A|1821

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA