IL_4WQ1_143

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

4WQ1|1|14|C|2055, 4WQ1|1|14|C|2612, 4WQ1|1|14|U|2613, 4WQ1|1|14|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_143 not in the Motif Atlas

Homologous match to IL_9DFE_079

Geometric discrepancy: 0.0609

The information below is about IL_9DFE_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70335.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4WQ1|1|14|A|2054
4WQ1|1|14|C|2055
4WQ1|1|14|G|2056
4WQ1|1|14|A|2057
*
4WQ1|1|14|U|2611
4WQ1|1|14|C|2612
4WQ1|1|14|U|2613
4WQ1|1|14|A|2614
4WQ1|1|14|U|2615

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3

Chain A5

50S ribosomal protein L22

Chain J5

50S ribosomal protein L32