IL_4WQ1_149

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4WQ1|1|14|C|2111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_149 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.2582

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

4WQ1|1|14|G|2110
4WQ1|1|14|C|2111
4WQ1|1|14|G|2112
4WQ1|1|14|U|2113
4WQ1|1|14|A|2114
4WQ1|1|14|G|2115
4WQ1|1|14|G|2116
4WQ1|1|14|A|2117
4WQ1|1|14|U|2118
4WQ1|1|14|A|2119
4WQ1|1|14|G|2120
*
4WQ1|1|14|C|2178
4WQ1|1|14|C|2179

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 3L

Transfer RNA; tRNA