IL_4WQ1_160

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

4WQ1|1|14|A|2572, 4WQ1|1|14|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_160 not in the Motif Atlas

Homologous match to IL_7RQB_098

Geometric discrepancy: 0.076

The information below is about IL_7RQB_098

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

4WQ1|1|14|C|2512
4WQ1|1|14|G|2513
*
4WQ1|1|14|C|2571
4WQ1|1|14|A|2572
4WQ1|1|14|C|2573
4WQ1|1|14|G|2574

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 1L

Transfer RNA; tRNA

Chain 29

50S ribosomal protein L3