IL_4WQ1_195

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_195 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1522

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4WQ1|1|1G|G|409
4WQ1|1|1G|G|410
4WQ1|1|1G|A|411
4WQ1|1|1G|A|412
4WQ1|1|1G|G|413
4WQ1|1|1G|A|414
4WQ1|1|1G|A|415
4WQ1|1|1G|G|416
*
4WQ1|1|1G|U|427
4WQ1|1|1G|G|428
4WQ1|1|1G|U|429
4WQ1|1|1G|A|430
4WQ1|1|1G|A|431
4WQ1|1|1G|A|432
4WQ1|1|1G|C|433

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 32

30S ribosomal protein S4