IL_4WQ1_227

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_227 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3425

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4WQ1|1|1G|C|1259
4WQ1|1|1G|C|1260
4WQ1|1|1G|A|1261
4WQ1|1|1G|C|1262
*
4WQ1|1|1G|G|1273
4WQ1|1|1G|G|1274
4WQ1|1|1G|A|1275
4WQ1|1|1G|G|1276

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1B

30S ribosomal protein Thx