IL_4WQ1_257

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4WQ1|1|1H|G|801, 4WQ1|1|1H|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_257 not in the Motif Atlas

Homologous match to IL_4WF9_021

Geometric discrepancy: 0.087

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4WQ1|1|1H|G|674
4WQ1|1|1H|A|675
4WQ1|1|1H|A|676
4WQ1|1|1H|A|677
4WQ1|1|1H|C|678
*
4WQ1|1|1H|G|799
4WQ1|1|1H|A|800
4WQ1|1|1H|G|801
4WQ1|1|1H|A|802
4WQ1|1|1H|U|803
4WQ1|1|1H|A|804
4WQ1|1|1H|G|805
4WQ1|1|1H|C|806

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain 78

50S ribosomal protein L15