IL_4WQ1_280

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4WQ1|1|1H|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_280 not in the Motif Atlas

Homologous match to IL_7RQB_044

Geometric discrepancy: 0.3431

The information below is about IL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WQ1|1|1H|G|1087
4WQ1|1|1H|A|1088
4WQ1|1|1H|G|1089
4WQ1|1|1H|U|1090
4WQ1|1|1H|G|1091
*
4WQ1|1|1H|C|1100
4WQ1|1|1H|U|1101
4WQ1|1|1H|C|1102

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6