IL_4WQ1_304

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4WQ1|1|1H|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_304 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.0997

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4WQ1|1|1H|C|1686
4WQ1|1|1H|G|1687
4WQ1|1|1H|U|1688
4WQ1|1|1H|A|1689
4WQ1|1|1H|A|1690
4WQ1|1|1H|C|1691
*
4WQ1|1|1H|G|1696
4WQ1|1|1H|G|1697
4WQ1|1|1H|A|1698
4WQ1|1|1H|G|1699
4WQ1|1|1H|A|1700
4WQ1|1|1H|A|1701
4WQ1|1|1H|G|1702

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 13

Small subunit ribosomal RNA; SSU rRNA