IL_4WQ1_317

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

4WQ1|1|1H|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_317 not in the Motif Atlas

Homologous match to IL_5J7L_324

Geometric discrepancy: 0.1072

The information below is about IL_5J7L_324

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

4WQ1|1|1H|G|2070
4WQ1|1|1H|A|2071
*
4WQ1|1|1H|U|2438
4WQ1|1|1H|A|2439
4WQ1|1|1H|C|2440
4WQ1|1|1H|C|2441

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 2K

Transfer RNA; tRNA