IL_4WQ1_333

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_333 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1836

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4WQ1|1|1H|C|2466
4WQ1|1|1H|C|2467
4WQ1|1|1H|G|2468
4WQ1|1|1H|A|2469
4WQ1|1|1H|G|2470
*
4WQ1|1|1H|C|2480
4WQ1|1|1H|G|2481
4WQ1|1|1H|G|2482
4WQ1|1|1H|C|2483
4WQ1|1|1H|G|2484

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 1K

Transfer RNA; tRNA

Chain 88

50S ribosomal protein L16