IL_4WQ1_345

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4WQ1|1|1H|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_345 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0653

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4WQ1|1|1H|G|2737
4WQ1|1|1H|A|2738
4WQ1|1|1H|U|2739
4WQ1|1|1H|A|2740
4WQ1|1|1H|A|2741
4WQ1|1|1H|C|2742
*
4WQ1|1|1H|G|2762
4WQ1|1|1H|G|2763
4WQ1|1|1H|A|2764
4WQ1|1|1H|A|2765
4WQ1|1|1H|G|2766
4WQ1|1|1H|C|2767

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6

Chain 58

50S ribosomal protein L13