IL_4WQ1_368

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGCUAG*CAAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_368 not in the Motif Atlas

Geometric match to IL_4N0T_001

Geometric discrepancy: 0.3775

The information below is about IL_4N0T_001

Detailed Annotation

Double sheared; A in syn; two near cWW pairs

Broad Annotation

Double sheared; A in syn; two near cWW pairs

Motif group

IL_71294.3

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

4WQ1|1|14|G|874
4WQ1|1|14|G|875
4WQ1|1|14|C|876
4WQ1|1|14|U|877
4WQ1|1|14|A|878
4WQ1|1|14|G|879
*
4WQ1|1|14|C|898
4WQ1|1|14|A|899
4WQ1|1|14|A|900
4WQ1|1|14|A|901
4WQ1|1|14|C|902
4WQ1|1|14|C|903

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1L

Transfer RNA; tRNA

Chain 45

50S ribosomal protein L16

Chain D5

50S ribosomal protein L25