IL_4WQ1_374

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAGCCUGUGAACCCC*GGGGGGAGGCGCCGGUGAAAUAC

Length

39 nucleotides

Bulged bases

4WQ1|1|14|A|2126, 4WQ1|1|14|U|2132, 4WQ1|1|14|U|2167, 4WQ1|1|14|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WQ1|1|14|G|2124
4WQ1|1|14|G|2125
4WQ1|1|14|A|2126
4WQ1|1|14|G|2127
4WQ1|1|14|C|2128
4WQ1|1|14|C|2129
4WQ1|1|14|U|2130
4WQ1|1|14|G|2131
4WQ1|1|14|U|2132
4WQ1|1|14|G|2133
4WQ1|1|14|A|2134
4WQ1|1|14|A|2135
4WQ1|1|14|C|2136
4WQ1|1|14|C|2137
4WQ1|1|14|C|2138
4WQ1|1|14|C|2139
*
4WQ1|1|14|G|2152
4WQ1|1|14|G|2153
4WQ1|1|14|G|2154
4WQ1|1|14|G|2155
4WQ1|1|14|G|2156
4WQ1|1|14|G|2157
4WQ1|1|14|A|2158
4WQ1|1|14|G|2159
4WQ1|1|14|G|2160
4WQ1|1|14|C|2161
4WQ1|1|14|G|2162
4WQ1|1|14|C|2163
4WQ1|1|14|C|2164
4WQ1|1|14|G|2165
4WQ1|1|14|G|2166
4WQ1|1|14|U|2167
4WQ1|1|14|G|2168
4WQ1|1|14|A|2169
4WQ1|1|14|A|2170
4WQ1|1|14|A|2171
4WQ1|1|14|U|2172
4WQ1|1|14|A|2173
4WQ1|1|14|C|2174

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 3L

Transfer RNA; tRNA