IL_4WQ1_380
3D structure
- PDB id
- 4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCAC*GGAGC
- Length
- 10 nucleotides
- Bulged bases
- 4WQ1|1|1G|C|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WQ1_380 not in the Motif Atlas
- Homologous match to IL_5J7L_056
- Geometric discrepancy: 0.4637
- The information below is about IL_5J7L_056
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
4WQ1|1|1G|G|1258
4WQ1|1|1G|C|1259
4WQ1|1|1G|C|1260
4WQ1|1|1G|A|1261
4WQ1|1|1G|C|1262
*
4WQ1|1|1G|G|1273
4WQ1|1|1G|G|1274
4WQ1|1|1G|A|1275
4WQ1|1|1G|G|1276
4WQ1|1|1G|C|1277
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1B
- 30S ribosomal protein Thx
- Chain 22
- 30S ribosomal protein S3
- Chain 5A
- 30S ribosomal protein S14 type Z
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