IL_4WQF_190

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQF_190 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0459

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4WQF|1|CA|U|239
4WQF|1|CA|G|240
4WQF|1|CA|A|241
4WQF|1|CA|G|242
4WQF|1|CA|U|243
4WQF|1|CA|A|244
4WQF|1|CA|G|245
*
4WQF|1|CA|C|253
4WQF|1|CA|G|254
4WQF|1|CA|A|255
4WQF|1|CA|A|256
4WQF|1|CA|A|257
4WQF|1|CA|G|258

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C8

50S ribosomal protein L35

Chain CP

50S ribosomal protein L15