IL_4WQF_223

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCAG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCAG,CUGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQF_223 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.2571

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

4WQF|1|CA|C|1052
4WQF|1|CA|C|1053
4WQF|1|CA|A|1054
4WQF|1|CA|G|1055
*
4WQF|1|CA|C|1104
4WQF|1|CA|U|1105
4WQF|1|CA|G|1106
4WQF|1|CA|G|1107

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CK

50S ribosomal protein L10