IL_4WQF_292

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4WQF|1|CA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQF_292 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0779

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4WQF|1|CA|G|2737
4WQF|1|CA|A|2738
4WQF|1|CA|U|2739
4WQF|1|CA|A|2740
4WQF|1|CA|A|2741
4WQF|1|CA|C|2742
*
4WQF|1|CA|G|2762
4WQF|1|CA|G|2763
4WQF|1|CA|A|2764
4WQF|1|CA|A|2765
4WQF|1|CA|G|2766
4WQF|1|CA|C|2767

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C9

50S ribosomal protein L36

Chain CH

50S ribosomal protein L6

Chain CN

50S ribosomal protein L13