IL_4WQF_362

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4WQF|1|DA|C|1400, 4WQF|1|DA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQF_362 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.0895

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4WQF|1|DA|C|1399
4WQF|1|DA|C|1400
4WQF|1|DA|G|1401
*
4WQF|1|DA|C|1501
4WQF|1|DA|A|1502
4WQF|1|DA|A|1503
4WQF|1|DA|G|1504

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DV

mRNA

Chain DW

Transfer RNA; tRNA

Chain DZ

50S ribosomal protein L9,Elongation factor G