IL_4WQR_005

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UCGUG*CGG

Length

8 nucleotides

Bulged bases

4WQR|1|13|G|64, 4WQR|1|13|U|65

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQR_005 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.3298

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

4WQR|1|13|U|62
4WQR|1|13|C|63
4WQR|1|13|G|64
4WQR|1|13|U|65
4WQR|1|13|G|66
*
4WQR|1|13|C|103
4WQR|1|13|G|104
4WQR|1|13|G|105

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain BI

30S ribosomal protein S20