IL_4WQR_203

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQR_203 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1336

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4WQR|1|1G|G|409
4WQR|1|1G|G|410
4WQR|1|1G|A|411
4WQR|1|1G|A|412
4WQR|1|1G|G|413
4WQR|1|1G|A|414
4WQR|1|1G|A|415
4WQR|1|1G|G|416
*
4WQR|1|1G|U|427
4WQR|1|1G|G|428
4WQR|1|1G|U|429
4WQR|1|1G|A|430
4WQR|1|1G|A|431
4WQR|1|1G|A|432
4WQR|1|1G|C|433

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 32

30S ribosomal protein S4