IL_4WQR_394

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GCCUG*CUGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQR_394 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3436

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

4WQR|1|14|G|2106
4WQR|1|14|C|2107
4WQR|1|14|C|2108
4WQR|1|14|U|2109
4WQR|1|14|G|2110
*
4WQR|1|14|C|2179
4WQR|1|14|U|2180
4WQR|1|14|G|2181
4WQR|1|14|G|2182
4WQR|1|14|C|2183

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 2A

30S ribosomal protein S11

Chain 3L

Transfer RNA; tRNA