IL_4WQR_395

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GCGUAGGAUAGGUG*CACCC

Length

19 nucleotides

Bulged bases

4WQR|1|14|C|2111, 4WQR|1|14|G|2112, 4WQR|1|14|U|2113, 4WQR|1|14|A|2114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQR_395 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3351

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

4WQR|1|14|G|2110
4WQR|1|14|C|2111
4WQR|1|14|G|2112
4WQR|1|14|U|2113
4WQR|1|14|A|2114
4WQR|1|14|G|2115
4WQR|1|14|G|2116
4WQR|1|14|A|2117
4WQR|1|14|U|2118
4WQR|1|14|A|2119
4WQR|1|14|G|2120
4WQR|1|14|G|2121
4WQR|1|14|U|2122
4WQR|1|14|G|2123
*
4WQR|1|14|C|2175
4WQR|1|14|A|2176
4WQR|1|14|C|2177
4WQR|1|14|C|2178
4WQR|1|14|C|2179

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 3L

Transfer RNA; tRNA