IL_4WQR_408

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQR_408 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0462

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

4WQR|1|1H|G|1666
4WQR|1|1H|G|1667
4WQR|1|1H|A|1668
4WQR|1|1H|A|1669
4WQR|1|1H|C|1670
4WQR|1|1H|U|1671
4WQR|1|1H|C|1672
4WQR|1|1H|U|1673
4WQR|1|1H|G|1674
*
4WQR|1|1H|C|1990
4WQR|1|1H|U|1991
4WQR|1|1H|G|1992
4WQR|1|1H|U|1993
4WQR|1|1H|C|1994

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 68

50S ribosomal protein L14