IL_4WQU_023

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGA*UAACC

Length

8 nucleotides

Bulged bases

4WQU|1|AA|G|823, 4WQU|1|AA|A|835, 4WQU|1|AA|A|836, 4WQU|1|AA|C|837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_023 not in the Motif Atlas

Homologous match to IL_7RQB_023

Geometric discrepancy: 0.0657

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

4WQU|1|AA|G|822
4WQU|1|AA|G|823
4WQU|1|AA|A|824
*
4WQU|1|AA|U|834
4WQU|1|AA|A|835
4WQU|1|AA|A|836
4WQU|1|AA|C|837
4WQU|1|AA|C|838

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L34

Chain AD

50S ribosomal protein L2

Chain AF

50S ribosomal protein L4

Chain AW

50S ribosomal protein L22