IL_4WQU_039

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

4WQU|1|AA|U|1058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_039 not in the Motif Atlas

Homologous match to IL_7RQB_038

Geometric discrepancy: 0.065

The information below is about IL_7RQB_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

4WQU|1|AA|G|1057
4WQU|1|AA|U|1058
4WQU|1|AA|C|1059
*
4WQU|1|AA|G|1195
4WQU|1|AA|C|1196

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AN

50S ribosomal protein L13

Chain AU

50S ribosomal protein L20