IL_4WQU_040

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

4WQU|1|AA|U|1187, 4WQU|1|AA|A|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_040 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.0744

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4WQU|1|AA|C|1064
4WQU|1|AA|U|1065
4WQU|1|AA|A|1066
4WQU|1|AA|A|1067
4WQU|1|AA|G|1068
4WQU|1|AA|U|1069
4WQU|1|AA|G|1070
*
4WQU|1|AA|C|1185
4WQU|1|AA|U|1186
4WQU|1|AA|U|1187
4WQU|1|AA|A|1188
4WQU|1|AA|A|1189
4WQU|1|AA|G|1190

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A9

50S ribosomal protein L36

Chain AN

50S ribosomal protein L13