IL_4WQU_051

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_051 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.0381

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4WQU|1|AA|A|1308
4WQU|1|AA|U|1309
4WQU|1|AA|G|1310
4WQU|1|AA|A|1311
4WQU|1|AA|G|1312
4WQU|1|AA|U|1313
4WQU|1|AA|A|1314
4WQU|1|AA|A|1315
*
4WQU|1|AA|U|2033
4WQU|1|AA|G|2034
4WQU|1|AA|A|2035
4WQU|1|AA|A|2036
4WQU|1|AA|A|2037
4WQU|1|AA|U|2038
4WQU|1|AA|U|2039

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L32

Chain AF

50S ribosomal protein L4

Chain AW

50S ribosomal protein L22