IL_4WQU_070

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4WQU|1|AA|G|1746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_070 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1184

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4WQU|1|AA|C|1733
4WQU|1|AA|G|1734
4WQU|1|AA|U|1735
4WQU|1|AA|A|1736
4WQU|1|AA|A|1737
4WQU|1|AA|C|1738
*
4WQU|1|AA|G|1743
4WQU|1|AA|G|1744
4WQU|1|AA|A|1745
4WQU|1|AA|G|1746
4WQU|1|AA|A|1747
4WQU|1|AA|A|1748
4WQU|1|AA|G|1749

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA