IL_4WQU_072

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

4WQU|1|AA|G|1832, 4WQU|1|AA|G|1847, 4WQU|1|AA|U|1851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_072 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0512

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4WQU|1|AA|U|1829
4WQU|1|AA|G|1830
4WQU|1|AA|C|1831
4WQU|1|AA|G|1832
4WQU|1|AA|A|1833
4WQU|1|AA|A|1834
4WQU|1|AA|C|1835
*
4WQU|1|AA|G|1844
4WQU|1|AA|G|1845
4WQU|1|AA|A|1846
4WQU|1|AA|G|1847
4WQU|1|AA|G|1848
4WQU|1|AA|U|1849
4WQU|1|AA|A|1850
4WQU|1|AA|U|1851
4WQU|1|AA|A|1852

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA