IL_4WQU_113

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4WQU|1|AA|A|2778

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_113 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0515

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4WQU|1|AA|G|2750
4WQU|1|AA|A|2751
4WQU|1|AA|U|2752
4WQU|1|AA|A|2753
4WQU|1|AA|A|2754
4WQU|1|AA|C|2755
*
4WQU|1|AA|G|2775
4WQU|1|AA|G|2776
4WQU|1|AA|A|2777
4WQU|1|AA|A|2778
4WQU|1|AA|G|2779
4WQU|1|AA|C|2780

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A9

50S ribosomal protein L36

Chain AH

50S ribosomal protein L6

Chain AN

50S ribosomal protein L13