IL_4WQU_130

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUACC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_130 not in the Motif Atlas

Homologous match to IL_5J7L_010

Geometric discrepancy: 0.1067

The information below is about IL_5J7L_010

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4WQU|1|BA|C|132
4WQU|1|BA|U|133
4WQU|1|BA|A|134
4WQU|1|BA|C|135
4WQU|1|BA|C|136
*
4WQU|1|BA|G|227
4WQU|1|BA|A|228
4WQU|1|BA|U|229
4WQU|1|BA|G|230

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BP

30S ribosomal protein S16

Chain BT

30S ribosomal protein S20