IL_4WQU_144

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_144 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.1031

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4WQU|1|BA|C|504
4WQU|1|BA|G|505
4WQU|1|BA|G|506
4WQU|1|BA|C|507
4WQU|1|BA|C|508
4WQU|1|BA|A|509
4WQU|1|BA|A|510
4WQU|1|BA|C|511
*
4WQU|1|BA|G|540
4WQU|1|BA|G|541

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S4

Chain BE

30S ribosomal protein S5

Chain BL

30S ribosomal protein S12