IL_4WQU_169

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGCAUG*CAUG

Length

10 nucleotides

Bulged bases

4WQU|1|BA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_169 not in the Motif Atlas

Homologous match to IL_6CZR_365

Geometric discrepancy: 0.1638

The information below is about IL_6CZR_365

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45699.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4WQU|1|BA|U|1052
4WQU|1|BA|G|1053
4WQU|1|BA|C|1054
4WQU|1|BA|A|1055
4WQU|1|BA|U|1056
4WQU|1|BA|G|1057
*
4WQU|1|BA|C|1203
4WQU|1|BA|A|1204
4WQU|1|BA|U|1205
4WQU|1|BA|G|1206

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BC

30S ribosomal protein S3

Chain BJ

30S ribosomal protein S10

Chain BN

30S ribosomal protein S14 type Z