IL_4WQU_177

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCACC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_177 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.2449

The information below is about IL_5J7L_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4WQU|1|BA|C|1259
4WQU|1|BA|C|1260
4WQU|1|BA|A|1261
4WQU|1|BA|C|1262
4WQU|1|BA|C|1263
*
4WQU|1|BA|G|1272
4WQU|1|BA|G|1273
4WQU|1|BA|G|1274
4WQU|1|BA|A|1275
4WQU|1|BA|G|1276

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BS

30S ribosomal protein S19

Chain BU

30S ribosomal protein Thx