IL_4WQU_188

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_188 not in the Motif Atlas

Homologous match to IL_7RQB_001

Geometric discrepancy: 0.0545

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4WQU|1|CA|G|24
4WQU|1|CA|U|25
4WQU|1|CA|G|26
4WQU|1|CA|G|27
4WQU|1|CA|A|28
4WQU|1|CA|U|29
4WQU|1|CA|G|30
*
4WQU|1|CA|C|510
4WQU|1|CA|U|511
4WQU|1|CA|G|512
4WQU|1|CA|A|513
4WQU|1|CA|A|514
4WQU|1|CA|A|515
4WQU|1|CA|C|516

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L32

Chain CU

50S ribosomal protein L20

Chain CW

50S ribosomal protein L22