IL_4WQU_212

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGAC*GGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_212 not in the Motif Atlas

Geometric match to IL_7RQB_026

Geometric discrepancy: 0.1245

The information below is about IL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94165.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4WQU|1|CA|C|846
4WQU|1|CA|U|847
4WQU|1|CA|G|848
4WQU|1|CA|A|849
4WQU|1|CA|C|850
*
4WQU|1|CA|G|927
4WQU|1|CA|G|928
4WQU|1|CA|U|930
4WQU|1|CA|G|931

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain AP

50S ribosomal protein L15

Chain C3

50S ribosomal protein L30