IL_4WQU_216

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_216 not in the Motif Atlas

Homologous match to IL_7RQB_029

Geometric discrepancy: 0.0873

The information below is about IL_7RQB_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_02509.1

Basepair signature

cWW-tSW-cWS-cSH-tWH-R-R-cWW

Number of instances in this motif group

5

Unit IDs

4WQU|1|CA|G|864
4WQU|1|CA|C|865
4WQU|1|CA|A|866
4WQU|1|CA|C|867
4WQU|1|CA|U|868
*
4WQU|1|CA|A|909
4WQU|1|CA|A|910
4WQU|1|CA|A|911
4WQU|1|CA|C|912

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CQ

50S ribosomal protein L16

Chain CZ

50S ribosomal protein L25