IL_4WQU_228

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGC,GCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_228 not in the Motif Atlas

Homologous match to IL_4WF9_042

Geometric discrepancy: 0.2504

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4WQU|1|CA|C|1038
4WQU|1|CA|G|1039
4WQU|1|CA|C|1040
*
4WQU|1|CA|G|1115
4WQU|1|CA|C|1116
4WQU|1|CA|G|1117

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CQ

50S ribosomal protein L16

Chain CZ

50S ribosomal protein L25