IL_4WQU_232

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_232 not in the Motif Atlas

Geometric match to IL_4UYK_002

Geometric discrepancy: 0.2719

The information below is about IL_4UYK_002

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_06586.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

4WQU|1|CA|G|1063
4WQU|1|CA|C|1064
*
4WQU|1|CA|G|1074
4WQU|1|CA|C|1075
4WQU|1|CA|C|1076

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CL

50S ribosomal protein L11

Chain CQ

50S ribosomal protein L16

Chain CZ

50S ribosomal protein L25