IL_4WQU_234

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

4WQU|1|CA|U|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_234 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.17

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4WQU|1|CA|C|1202
4WQU|1|CA|G|1203
4WQU|1|CA|A|1204
4WQU|1|CA|U|1205
4WQU|1|CA|G|1206
*
4WQU|1|CA|U|1240
4WQU|1|CA|A|1241
4WQU|1|CA|A|1242
4WQU|1|CA|G|1243

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CF

50S ribosomal protein L4

Chain CP

50S ribosomal protein L15