IL_4WQU_237

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_237 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.0349

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4WQU|1|CA|A|1262
4WQU|1|CA|U|1263
4WQU|1|CA|G|1264
4WQU|1|CA|A|1265
4WQU|1|CA|G|1266
4WQU|1|CA|U|1267
4WQU|1|CA|A|1268
4WQU|1|CA|A|1269
*
4WQU|1|CA|U|2011
4WQU|1|CA|G|2012
4WQU|1|CA|A|2013
4WQU|1|CA|A|2014
4WQU|1|CA|A|2015
4WQU|1|CA|U|2016
4WQU|1|CA|U|2017

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L32

Chain CF

50S ribosomal protein L4

Chain CW

50S ribosomal protein L22