IL_4WQU_256

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4WQU|1|CA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_256 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1131

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4WQU|1|CA|C|1686
4WQU|1|CA|G|1687
4WQU|1|CA|U|1688
4WQU|1|CA|A|1689
4WQU|1|CA|A|1690
4WQU|1|CA|C|1691
*
4WQU|1|CA|G|1696
4WQU|1|CA|G|1697
4WQU|1|CA|A|1698
4WQU|1|CA|G|1699
4WQU|1|CA|A|1700
4WQU|1|CA|A|1701
4WQU|1|CA|G|1702

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L2

Chain DA

Small subunit ribosomal RNA; SSU rRNA