IL_4WQU_267

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

4WQU|1|CA|C|2055, 4WQU|1|CA|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_267 not in the Motif Atlas

Homologous match to IL_9DFE_079

Geometric discrepancy: 0.065

The information below is about IL_9DFE_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70335.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4WQU|1|CA|A|2054
4WQU|1|CA|C|2055
4WQU|1|CA|G|2056
4WQU|1|CA|A|2057
*
4WQU|1|CA|U|2611
4WQU|1|CA|C|2612
4WQU|1|CA|U|2613
4WQU|1|CA|A|2614
4WQU|1|CA|U|2615

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L32

Chain CE

50S ribosomal protein L3

Chain CW

50S ribosomal protein L22