IL_4WQU_284

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_284 not in the Motif Atlas

Homologous match to IL_7RQB_090

Geometric discrepancy: 0.1124

The information below is about IL_7RQB_090

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

4WQU|1|CA|U|2401
4WQU|1|CA|C|2402
4WQU|1|CA|C|2403
*
4WQU|1|CA|G|2414
4WQU|1|CA|G|2415

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L28

Chain C6

50S ribosomal protein L33

Chain C8

50S ribosomal protein L35

Chain CP

50S ribosomal protein L15