IL_4WQU_300

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4WQU|1|CA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_300 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.071

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4WQU|1|CA|G|2737
4WQU|1|CA|A|2738
4WQU|1|CA|U|2739
4WQU|1|CA|A|2740
4WQU|1|CA|A|2741
4WQU|1|CA|C|2742
*
4WQU|1|CA|G|2762
4WQU|1|CA|G|2763
4WQU|1|CA|A|2764
4WQU|1|CA|A|2765
4WQU|1|CA|G|2766
4WQU|1|CA|C|2767

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C9

50S ribosomal protein L36

Chain CH

50S ribosomal protein L6

Chain CN

50S ribosomal protein L13