IL_4WQU_326

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

4WQU|1|DA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_326 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1131

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4WQU|1|DA|G|409
4WQU|1|DA|G|410
4WQU|1|DA|A|411
4WQU|1|DA|A|412
4WQU|1|DA|G|413
4WQU|1|DA|A|414
4WQU|1|DA|A|415
4WQU|1|DA|G|416
*
4WQU|1|DA|U|427
4WQU|1|DA|G|428
4WQU|1|DA|U|429
4WQU|1|DA|A|430
4WQU|1|DA|A|431
4WQU|1|DA|A|432
4WQU|1|DA|C|433

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S4