IL_4WQU_338

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GG*CCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_338 not in the Motif Atlas

Homologous match to IL_6CZR_140

Geometric discrepancy: 0.1896

The information below is about IL_6CZR_140

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.5

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

4WQU|1|DA|G|657
4WQU|1|DA|G|658
*
4WQU|1|DA|C|747
4WQU|1|DA|C|748
4WQU|1|DA|C|749

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DO

30S ribosomal protein S15