IL_4WQU_343

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_343 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0901

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4WQU|1|DA|C|779
4WQU|1|DA|A|780
4WQU|1|DA|A|781
4WQU|1|DA|A|782
4WQU|1|DA|C|783
*
4WQU|1|DA|G|799
4WQU|1|DA|G|800
4WQU|1|DA|U|801
4WQU|1|DA|A|802
4WQU|1|DA|G|803

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain DK

30S ribosomal protein S11